Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945818.1_cds_XP_016488177.1_78837
CDS Infomation

[gene=LOC107808199] [db_xref=GeneID:107808199] [protein=2-isopropylmalate synthase A-like isoform X2] [protein_id=XP_016488177.1] [location=join(2226..2869,4925..5138,5218..5298,7671..7763,7859..7945,13453..13553,14088..14121,14198..14272,14436..14519,14626..14760,15297..15442,16057..16081)] [gbkey=CDS]
Sequence

ATGTCTTCTCTCTGTTCAAACTCTGCAACTTCTCTTAGTTGTAATAACTCCTTCCAATCC
AAAAATCCTCTTCTTCACACCATCTTTAACTTCTTTCCTTCAATCAAACCACACTCTTGT
TTCCCATATACAGTTATCCGGTGCTCAATTCAAAAGCGACCTGAATATATACCGAGTAAA
ATCTCCGACCACAAATACGTACGCATTTTCGACACGACTCTCCGCGATGGAGAGCAATCC
CCGGGCGCTACGATGACTACGAAAGAAAAATTAGATGTTGCCCGTAAATTAGCGAAACTC
GGAGTTGACATAATCGAAGCTGGGTTTCCAGCTTCATCTGAAGCTGATTTTGAAGCTGTG
AGATTAATAGCAGAGGAAATTGGTAATAATAGCGACGGTGATTATGTGCCGGTGATTTGT
GGATTAGCGAGGTGCAATAAGAGGGATATTGATAAAGCGTGGGAAGCTGTGAAGTGTGCG
AAGAGACCTAGGGTTCATACGTTTATAGCGACGAGTGAGATACATATGAAGTATAAGTTG
AAGATGAGTAAAGAAGAAGTAGTGGAGAAAGCGCGGAGTATGGTTGCTTATGCGAGGAGT
TTGGGATGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAGGTCTGAGCGTGAGTTC
CTTTACCATATCCTTGGAGAAGTTATCAAAGCTGGTGCAACAACCCTTAACATACCTGAT
ACTGTTGGATACACTGTGCCCACTGAATTTGGACAATTAATTGCTGACATAAAAGCCAAT
ACCCCAGGAATTGAAAATGTGATCATTTCTACACACTGCCAGAATGATCTTGGACTTTCT
ACTGCCAACACTTTAGCTGGAGCTTGTGCAGGGGCAAGACAAGTAGAAGTGACCATCAAT
GGCATTGGTGAAAGAGCTGGAAATGCTTCTCTGGAGGAGGTTGTAATGGCCTTAAAATGT
CGCGGAGAGCAAGTATTAGGTGGCCTCTACACGGGGATTAATAGTCAACACATTGTCCCG
ACGAGCAAAATGGTAGAGGAGTACACTGGGCTTCAAGTGCAGCCACATAAGGCCATTGTT
GGAGCTAATGCATTTGCTCATGAAAGTGGCATCCATCAGGATGGAATGTTAAAACACAAA
GATACCTATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAAGCCGGT
ATTGTCCTTGGGAAACTCAGTGGACGCCATGCATTGAAATCCAAAATGCTTGAGCTTGGA
TATGACATTGAGGGAAAAGAACTGGAGGACATCTTCTGGCGATTTAAGTCGGTGGCTGAG
AAGAAAAAGAAAATTACAGATGATGACATAATAGCACTGATGTCAGATGAAATTTTCCAG
CCTCAAGTTGTTTGGCAACTTGCAGATGTACAGATTACCTGTGGAAGTCTTGGCCTCTCT
ACAGCAACTGTTAAGCTTATTGACAGTGATGGTCAAGATCATGTTGCTTGTTCTGTTGGA
ACCGGACCAGTTGATGCAGCTTATAAGGCAGTTGACCTCATTGTAAAGGTACCTATAACA
CTCCTCGAGTATTCCATGAATGCAGTCACAGAAGGTATAGATGCCATAGCCTCAACCAGA
GTGTTAATCCGCGGGGAGGATGACCATGCTATAACCAATGGTTCAATTGGACCGACTCTT
CACCGTACATTTAGGCGACTTGCGCGCTTACCGGAATAA

Peptide Sequence

PEP ID

XP_016488177.1
PEP Infomation

PREDICTED: 2-isopropylmalate synthase A-like isoform X2 [Nicotiana tabacum]
Sequence

MSSLCSNSATSLSCNNSFQSKNPLLHTIFNFFPSIKPHSCFPYTVIRCSIQKRPEYIPSK
ISDHKYVRIFDTTLRDGEQSPGATMTTKEKLDVARKLAKLGVDIIEAGFPASSEADFEAV
RLIAEEIGNNSDGDYVPVICGLARCNKRDIDKAWEAVKCAKRPRVHTFIATSEIHMKYKL
KMSKEEVVEKARSMVAYARSLGCEDVEFSPEDAGRSEREFLYHILGEVIKAGATTLNIPD
TVGYTVPTEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGACAGARQVEVTIN
GIGERAGNASLEEVVMALKCRGEQVLGGLYTGINSQHIVPTSKMVEEYTGLQVQPHKAIV
GANAFAHESGIHQDGMLKHKDTYEIISPEDIGLNRANEAGIVLGKLSGRHALKSKMLELG
YDIEGKELEDIFWRFKSVAEKKKKITDDDIIALMSDEIFQPQVVWQLADVQITCGSLGLS
TATVKLIDSDGQDHVACSVGTGPVDAAYKAVDLIVKVPITLLEYSMNAVTEGIDAIASTR
VLIRGEDDHAITNGSIGPTLHRTFRRLARLPE

Transcript Sequence

Gene sequence data has not been registered.